rs51882836 SNP Detail

Summary

• ID
  rs51882836
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87415770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC TATAACACCC TTCCGCTTCT
  G
  TTTTCTAAAG ATCCAGACTC CAGTC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135463137	ENSMUSSNP3641753	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320833953	CHEV_3_87312385	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51882836					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87415770 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	within coordinates
Rr397759	regulatory region 397759	1687 bp downstream
Rr397760	regulatory region 397760	within coordinates
Rr579500	regulatory region 579500	1204 bp distal
Rr579501	regulatory region 579501	within coordinates
Rr579502	regulatory region 579502	105 bp distal
Rr579503	regulatory region 579503	39 bp distal
Rr579504	regulatory region 579504	475 bp proximal
Rr579505	regulatory region 579505	670 bp proximal
Rr579506	regulatory region 579506	700 bp proximal
Rr579507	regulatory region 579507	976 bp proximal