rs51857009 SNP Detail

Summary

• ID
  rs51857009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119239495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGGAGCGA GGATATAGTT TTCCCTTAAA GCGTCATCTC
  CTTGCCACTA CCAACATCTG TCCTAGTGAA CACTTTTGCA CGTCCATACA GACCCTCTGA
  Y
  GCATCCAACA CTCAATGAAG CAGTTCCTCA GCCACGCGTG CACGCACCCG ATGCTTTATT
  ATAAAGCCGG AGAGACAGAC ACCTCAACTC TTAAAGCTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147328440	ENSMUSSNP694307	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51857009					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119239495 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc30	coiled-coil domain containing 30			Intron
				Noncoding-Transcript-Variant
Rr598572	regulatory region 598572			617 bp distal
Tssr43113	transcription start site region 43113			1434 bp downstream
Tssr43114	transcription start site region 43114			1507 bp downstream
Tssr43115	transcription start site region 43115			1530 bp downstream