rs51855984 SNP Detail

Summary

• ID
  rs51855984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90419915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC TACCCCAGGA AGAAGTCTGA
  Y
  ACCTTTGGTG AGCTGATGGG GGGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135476764	ENSMUSSNP5031693	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320837932	CHEV_3_90316530	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51855984					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90419915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13466	CpG island 13466	1576 bp proximal
Gm56783	predicted gene, 56783	906 bp downstream
Rr375350	regulatory region 375350	within coordinates
Rr580384	regulatory region 580384	454 bp proximal
Rr580385	regulatory region 580385	1353 bp proximal
Rr580386	regulatory region 580386	1470 bp proximal
Rr580387	regulatory region 580387	1660 bp proximal
Rr580388	regulatory region 580388	1770 bp proximal
Rr580389	regulatory region 580389	1774 bp proximal
Rr580390	regulatory region 580390	1838 bp proximal
S100a1	S100 calcium binding protein A1	Intron
S100a13	S100 calcium binding protein A13	1744 bp upstream
Tssr34240	transcription start site region 34240	1434 bp upstream
Tssr34241	transcription start site region 34241	542 bp upstream
Tssr34242	transcription start site region 34242	1642 bp downstream
Tssr34243	transcription start site region 34243	1748 bp downstream
Tssr34244	transcription start site region 34244	1762 bp downstream
Tssr34245	transcription start site region 34245	1797 bp downstream