rs51813549 SNP Detail

Summary

• ID
  rs51813549
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142325094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTCCTAAATT TCTGTAAGAG GGGAGGTCAT TAGAAGACTC
  TTAGCTGTCA CACAGGCACC CAATGATGAG GGGTTCAGCT CTGCAACTGA ACATTCAGAA
  T
  AACAGTAGTA CCACACAGAG GAAATGTCAC AGTCACGGGG CTTAGTACTC TTGTGGAATA
  CAGAAACACA AAGATACTTT CTGTATAATT ATTTTCTGGT A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136016092	ENSMUSSNP4384751	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51813549					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142325094 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1330 bp upstream
Gbp2b	guanylate binding protein 2b	154 bp downstream
Gm54185	predicted gene, 54185	51 bp upstream
Rr398088	regulatory region 398088	549 bp upstream
Rr586457	regulatory region 586457	357 bp distal
Rr586458	regulatory region 586458	779 bp proximal
Rr586459	regulatory region 586459	1280 bp proximal
Tssr32216	transcription start site region 32216	1148 bp downstream
Tssr32217	transcription start site region 32217	1110 bp downstream
Tssr32218	transcription start site region 32218	1056 bp downstream
Tssr32219	transcription start site region 32219	1019 bp downstream
Tssr32220	transcription start site region 32220	1005 bp downstream
Tssr32221	transcription start site region 32221	987 bp downstream
Tssr32222	transcription start site region 32222	931 bp downstream
Tssr32223	transcription start site region 32223	874 bp downstream
Tssr32224	transcription start site region 32224	820 bp downstream
Tssr32225	transcription start site region 32225	482 bp downstream
Tssr32226	transcription start site region 32226	442 bp downstream
Tssr32227	transcription start site region 32227	1263 bp upstream
Tssr32228	transcription start site region 32228	1314 bp upstream
Tssr32229	transcription start site region 32229	1353 bp upstream
Tssr32230	transcription start site region 32230	1389 bp upstream
Tssr32231	transcription start site region 32231	1406 bp upstream
Tssr32232	transcription start site region 32232	1940 bp upstream
Tssr35947	transcription start site region 35947	152 bp upstream