rs51740539 SNP Detail

Summary

• ID
  rs51740539
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138783745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAT TTTTGCCTTT CCTTTTTGGC
  C
  GTTAGATCAC CAGTGCTGAG AACAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135960422	ENSMUSSNP7134521	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320982566	CHEV_3_138740948	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51740539					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138783745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13881	CpG island 13881	1786 bp distal
Gm56773	predicted gene, 56773	1443 bp downstream
Rr586244	regulatory region 586244	1397 bp distal
Rr586245	regulatory region 586245	216 bp proximal
Rr586246	regulatory region 586246	1939 bp proximal