rs51709000 SNP Detail

Summary

• ID
  rs51709000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85352941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGTGTTC TGAGAACTGC
  CAGCACACTT GTTTCATTAT TAAGATAATG GTTAATAATT ATGGATGCTG AATTTCAGCA
  AGAGTCGGCC AACAACTGAC TCATGAGCTT TCTGTGCATG ACCTCACTCA TTCTTCAGAG
  CCACCCTATA TGTGAATTTG GTTTCCCAGA AGGCAGAATT ATAGGTTAGA TAAATTTACC
  Y
  AAGATGCATA ACAAAGAAGC TGTTGTAGCA CAGCCTATAA TCCCAGGACT CTGAAGGCAA
  ATTCAAGGCC AGCCTGGGCT ACATGGTGAG CCTTTACTTT TTTCTGTTAA CTTTCAGAGC
  CTACCCTTAA ATTAGATTTT TTTTTTCAAT TTTCAAGACA GAGCCTCTCT GTGTAACCTT
  GGATGTTGTG GAACTCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906849	NES15957611	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51709000					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906849	NES15957611	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85352941 () rs orientation: forward

Symbol	Name	Function Class
4933423K11Rik	RIKEN cDNA 4933423K11 gene	within coordinates
Cpgi17642	CpG island 17642	753 bp distal
Rab11fip5	RAB11 family interacting protein 5 (class I)	1325 bp upstream
Rr633193	regulatory region 633193	1130 bp distal
Rr633194	regulatory region 633194	367 bp distal
Rr633195	regulatory region 633195	441 bp distal
Rr633196	regulatory region 633196	1060 bp proximal
Tssr1914	transcription start site region 1914	1514 bp upstream
Tssr61747	transcription start site region 61747	1406 bp upstream
Tssr61748	transcription start site region 61748	1380 bp upstream
Tssr61749	transcription start site region 61749	1367 bp upstream
Tssr61750	transcription start site region 61750	1295 bp upstream
Tssr61751	transcription start site region 61751	1255 bp upstream