rs51694121 SNP Detail

Summary

• ID
  rs51694121
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAATCGG GTCTTATATT
  TGATACTGCA AACATGGACT CTGTAGACAT ACTAAATTGT ATTGTTGGGA TTTGTTTTTA
  CAACACAGTG ATAGGGCAGC TGTCTTTGGG TAGACATTTT GTATCACATA CATCCCCTAC
  TGGATATTCT TAGTTGTGTG CTCATAAGTA ATTCAAAGAT GTAGCTTGCT CTAAGCTGGG
  R
  TTGGCATGTT ATAAACATGA TAAAAATCTG AACATATCCA TGGAACACAG CTCCTAGGGC
  CTCATGCTAT CTGCAGACAT TGGTTCCCAG GGTAGACAAT GGGCAGTGCC CAATGTGGGA
  AGGCTCTGTG GTTGCTGGAT GAGCAGAGTA TTTCATTGGA GAGGAGAAGA AAATTCCCCT
  CCAGGCAGAA TGCATAGGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136016032	ENSMUSSNP7041101	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51694121					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324400 () rs orientation: forward

Symbol	Name	Function Class
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	1243 bp upstream
Rr586457	regulatory region 586457	96 bp proximal
Rr586458	regulatory region 586458	1473 bp proximal
Rr586459	regulatory region 586459	1974 bp proximal
Tssr32216	transcription start site region 32216	454 bp downstream
Tssr32217	transcription start site region 32217	416 bp downstream
Tssr32218	transcription start site region 32218	362 bp downstream
Tssr32219	transcription start site region 32219	325 bp downstream
Tssr32220	transcription start site region 32220	311 bp downstream
Tssr32221	transcription start site region 32221	293 bp downstream
Tssr32222	transcription start site region 32222	237 bp downstream
Tssr32223	transcription start site region 32223	180 bp downstream
Tssr32224	transcription start site region 32224	126 bp downstream
Tssr32225	transcription start site region 32225	195 bp upstream
Tssr32226	transcription start site region 32226	243 bp upstream
Tssr32227	transcription start site region 32227	1957 bp upstream
Tssr35947	transcription start site region 35947	536 bp downstream