rs51675070 SNP Detail

Summary

• ID
  rs51675070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138187033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG GTAATTCCTG CCAAGCGCCT
  Y
  AGTTTGATAG CTGCAGAGGC AGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147647536	ENSMUSSNP4825587	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321373815	CHEV_4_138015637	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51675070					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138187033 () rs orientation: forward

Symbol	Name	Function Class
Camk2n1	calcium/calmodulin-dependent protein kinase II inhibitor 1	mRNA-UTR
Rr377275	regulatory region 377275	1348 bp downstream
Rr602934	regulatory region 602934	107 bp proximal
Rr602935	regulatory region 602935	183 bp proximal
Tssr39869	transcription start site region 39869	1805 bp downstream
Tssr39870	transcription start site region 39870	1776 bp downstream
Tssr39871	transcription start site region 39871	1720 bp downstream
Tssr44170	transcription start site region 44170	197 bp downstream