rs51664529 SNP Detail

Summary

• ID
  rs51664529
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74530301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTATTCT ATGTAAATGT
  CCCTCATGTT TCTGAAAAGT GCTGTAGTTT AGTCTCACCC TATCCAGCCT CCCAAACAGG
  GCCAACGATC TAATTCCGAG AATCTGAAGG AAGACAGAGT GTGGACACCC CCACCCTGCT
  CTCCCAACTA AAATCCAACT CAGCTGCTCA AGGCAGGAAA ACCCCTTTCC TCGGGGAGCC
  S
  GCGGACTGAC TTCCACAGAG GCCTACCGAG AAACCTTGGG CCCTGGGGCG CGAGATTGGG
  GGTGGGGTGG GGATAGGCTT AGTCCTCAGA GCACCGGGGA AGCTACTTTC TCCCCGGGAG
  GGCTGAGCTC CCATTGGGCG GCCTCGGGAG GTTGCCTTCC ATATTCCTGC CTGAGGACCA
  GTTGTAAATG TTACCGCTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss146763741	ENSMUSSNP3241381	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs51664529					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74530301 () rs orientation: forward

Symbol	Name	Function Class
Gm56188	predicted gene, 56188	1049 bp downstream
Gm75671	predicted gene, 75671	884 bp upstream
Hoxd9	homeobox D9	mRNA-UTR
Igs15	intergenic site 15	within coordinates
Rr559359	regulatory region 559359	394 bp proximal
Rr559360	regulatory region 559360	895 bp proximal
Tssr18417	transcription start site region 18417	1975 bp downstream
Tssr18418	transcription start site region 18418	1949 bp downstream
Tssr18419	transcription start site region 18419	1931 bp downstream