rs51599398 SNP Detail

Summary

• ID
  rs51599398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87418312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT GAAAGGACAG ACAATGCTCT
  Y
  AACTGCTGAG TCATCGTTCT AGCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135463164	ENSMUSSNP217512	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51599398					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87418312 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	within coordinates
Rr397761	regulatory region 397761	1402 bp upstream
Rr579504	regulatory region 579504	1567 bp distal
Rr579505	regulatory region 579505	1851 bp distal
Rr579506	regulatory region 579506	1821 bp distal
Rr579507	regulatory region 579507	1260 bp distal
Rr579508	regulatory region 579508	1003 bp proximal
Rr579509	regulatory region 579509	1674 bp proximal
Tssr926	transcription start site region 926	1810 bp upstream
Tssr33941	transcription start site region 33941	1571 bp downstream
Tssr33942	transcription start site region 33942	1581 bp downstream
Tssr33943	transcription start site region 33943	1632 bp downstream