rs51568204 SNP Detail

Summary

• ID
  rs51568204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90520263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGACTGC TTCCCCTCCC
  TCACTTGGGG ACCTTGCCAC TAGAGGGCAA CAGCATCAGT GTGGTTCCCA GTCCCCCTCA
  CACTGATGCT AACTTTAAGG ACACTGCTCT CGGGCTGGCA GAAGGTTCAG CACACAAGCC
  AGAGTTTCGA GTCACGTGCC AGAAGGGAAA ACTAAACACG GAATTAGAGA AAACTTGATG
  Y
  CTCTGGCTTG CACTGGTCTC CTTTGGGCCC GTTAGGGCCC GCTAAACTCC CTCATTCCGC
  TCCTAATCCT GGACAGTCCA GGCAACAGGG GCGTGGAAAG TTGAGGGGGC TGGGATGTTC
  GTTTGCCTTG CCTCAGGCGC TGGGTGGGGT CGGGGCGTGC CAGCACTCCC TGGGCGGACC
  TCACGGATGC TGGCCACTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424277	NES15923466	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51568204					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424277	NES15923466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90520263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13468	CpG island 13468	30 bp proximal
Gm57853	predicted gene, 57853	228 bp upstream
Rr580416	regulatory region 580416	573 bp distal
Rr580417	regulatory region 580417	within coordinates
Rr580418	regulatory region 580418	147 bp distal
S100a5	S100 calcium binding protein A5	1176 bp downstream
S100a6	S100 calcium binding protein A6 (calcyclin)	mRNA-UTR
Tssr30242	transcription start site region 30242	660 bp downstream
Tssr30243	transcription start site region 30243	91 bp downstream
Tssr30244	transcription start site region 30244	75 bp downstream
Tssr30245	transcription start site region 30245	within coordinates
Tssr30246	transcription start site region 30246	190 bp upstream
Tssr30247	transcription start site region 30247	220 bp upstream
Tssr30248	transcription start site region 30248	326 bp upstream
Tssr30249	transcription start site region 30249	563 bp upstream
Tssr30250	transcription start site region 30250	772 bp upstream
Tssr30251	transcription start site region 30251	819 bp upstream
Tssr30252	transcription start site region 30252	1390 bp upstream
Tssr30253	transcription start site region 30253	1414 bp upstream
Tssr34246	transcription start site region 34246	1455 bp downstream