rs51565438 SNP Detail

Summary

• ID
  rs51565438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127654079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTACATCC ACCTTAAGTA
  TGGGCCACTC CTTCCTGTGG CAGCCATATA AAGGGCTTTG AAGGAGGAGG CTTTTGTTCT
  TTGCCTGTGT GCCCTCCCTC TCACTGGCAA GTCTAACCCT TCACTGGCGT CAGAGCCTAC
  TTCTTCAGGA TTCCTGTGTA TACTGAAGAC CAGCTTAGAC ATCCAGCCTC ATAGACTGAA
  Y
  AACCGCTAGA TTCTCGGACT TTCTGTTAGG ATATGGCCAG TGCTGGACTA GCCTAAGCAT
  AGCCTGTAAG CCACTCTACT AAATCCCAAG TATGTGAGAA CCCTGACTTA TGCAGGTAGT
  ATTTCACATT TAAACTACAA TACCTTCAGG ATATGTACTC ACTCCTGAGC TTATTTCTAT
  ATTCATTATC TCTATCTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135873359	ENSMUSSNP3450062	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320957586	CHEV_3_127563348	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51565438					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127654079 () rs orientation: forward

Symbol	Name	Function Class
Gm35585	predicted gene, 35585	within coordinates
Rr584887	regulatory region 584887	968 bp proximal
Tssr31614	transcription start site region 31614	1155 bp upstream