rs51541357 SNP Detail

Summary

• ID
  rs51541357
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:127701403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACATCTACT AGCGATTTAA AAAACAAAAC CAAAAAACCC
  AGAAGACACT GTTAGTTCAC TGCTAGAATT AGCGTTCTTT CCTAGCTAAC TCCTCCGGAG
  R
  GTAGCCATTC GTGGACACAG GAGTCAACAA AGCTAAGAAA ATACACCCAC CAACATGTAA
  GAAAATGGAA GCTACAGCAC GAAGCCGAGA CTAGAAAAGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60798956	NES16471939	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51541357					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60798956	NES16471939	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127701403 () rs orientation: forward

Symbol	Name	Function Class
2900009J06Rik	RIKEN cDNA 2900009J06 gene	within coordinates
Ccnt2	cyclin T2	498 bp upstream
Cpgi690	CpG island 690	163 bp proximal
Rr396250	regulatory region 396250	175 bp upstream
Rr417683	regulatory region 417683	within coordinates
Rr417684	regulatory region 417684	189 bp proximal
Rr417685	regulatory region 417685	1198 bp proximal
Tssr8489	transcription start site region 8489	517 bp upstream
Tssr8490	transcription start site region 8490	575 bp upstream