rs51537383 SNP Detail

Summary

• ID
  rs51537383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79051031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCCAAAG ACCTGCACTA
  AAATCAGACT CCAGTGCGAG TTCTGCTTGA CAACCTTTCT TTTGGAAAAT GAGGCATATG
  GTGGCTCTTT TCTAGATTAG GTCTGAAGAG ATTTCATCAA GGAAACACAC CTAGAACCCG
  ACCAGGATAG GGCTGGACAA GGCACGGAAC TGGAATTTGC CAGGGAGGCT CATTCACCTC
  Y
  TCAGGGTCAC TGCATCTAAG GAACTTCCCT GCACCCAACG GAAGAGCTCA TCACTTACTG
  ATGACAAAAC CGAAACCAAA TACTCTAATC CATGGCATCC TACTTACTCA TTTCCAAGGC
  TTTAGTGGTT TATAAGTATT TTTAAAGTTC AACACTACTG CATCAATTCT TACAATAAAT
  TAAAACTAAC TCCTATATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60421106	NES15922970	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51537383					SNP	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60421106	NES15922970	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79051031 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr578466	regulatory region 578466			415 bp proximal
Rr578467	regulatory region 578467			1243 bp proximal
Tssr33630	transcription start site region 33630			758 bp upstream
Tssr33631	transcription start site region 33631			682 bp downstream