rs51536360 SNP Detail

Summary

• ID
  rs51536360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60059931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGCAGGA AGTGTTGGTA
  TGCAGTTATG CACATAGAGG AAGCAGCTTT ACTTTAACTG GCCAAGCAAA GAATGGGAAA
  AGTACAGAGA GATGAGGGGG TTGGTATCTA GTGACCCATA GCAAATCAAC TGATACTTGT
  GTCAAGAACA TCATTTGATT AGTTTCATTA GCCCCCTAAA ATTAGTCACA TTTCCAAAAG
  R
  CCCCTCGAAA ATCATGAAGG TTTTTTCCCT TTCACTGGAA AAGGAGTTAG AAATGGTGCT
  GGTTATTTCA AGTGCTGCAA TGAGTCACAC GGGAAATATT GTCAAATCCA AAGACGTTCA
  CAGGCAGTAT GTTAGATTTG TATGAGTAAA CATTGGTAAT GTGAATGTTT TAAACATTGT
  ACTCTGCATG AGAAAGATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52559989	NES15632461	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51536360					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52559989	NES15632461	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60059931 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	550 bp upstream
Gm41331	predicted gene, 41331	334 bp downstream
Rr390810	regulatory region 390810	within coordinates
Rr502965	regulatory region 502965	472 bp distal
Tssr4605	transcription start site region 4605	873 bp upstream
Tssr134460	transcription start site region 134460	1185 bp upstream
Tssr134461	transcription start site region 134461	1051 bp upstream
Tssr134462	transcription start site region 134462	949 bp upstream
Tssr134463	transcription start site region 134463	899 bp upstream
Tssr134464	transcription start site region 134464	799 bp upstream
Tssr134465	transcription start site region 134465	751 bp upstream
Tssr134466	transcription start site region 134466	742 bp upstream
Tssr134467	transcription start site region 134467	699 bp upstream
Tssr134468	transcription start site region 134468	667 bp upstream
Tssr134469	transcription start site region 134469	619 bp upstream