rs51513563 SNP Detail

Summary

• ID
  rs51513563
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:71156570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC AGAGCTCAGT TAAACTGTCC
  T
  CCAACTCAGA GCGCCCACAC TCTGA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145887975	ENSMUSSNP6308905	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325440527	CHEV_17_71198915	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51513563					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71156570 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56904	predicted gene, 56904			1025 bp upstream
Rr530334	regulatory region 530334			766 bp distal
Rr530335	regulatory region 530335			205 bp proximal
Rr530336	regulatory region 530336			1103 bp proximal
Rr530337	regulatory region 530337			1484 bp proximal
Rr530338	regulatory region 530338			1622 bp proximal
Tgif1	TGFB-induced factor homeobox 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr145684	transcription start site region 145684			106 bp downstream
Tssr145685	transcription start site region 145685			582 bp upstream
Tssr145686	transcription start site region 145686			1120 bp upstream
Tssr145687	transcription start site region 145687			1761 bp upstream
Tssr149219	transcription start site region 149219			283 bp upstream
Tssr149220	transcription start site region 149220			206 bp downstream
Tssr149221	transcription start site region 149221			778 bp downstream
Tssr149222	transcription start site region 149222			1482 bp downstream
Tssr149223	transcription start site region 149223			1500 bp downstream
Tssr149224	transcription start site region 149224			1534 bp downstream
Tssr149225	transcription start site region 149225			1614 bp downstream
Tssr149226	transcription start site region 149226			1643 bp downstream