rs51477608 SNP Detail

Summary

• ID
  rs51477608
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:156266052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TAAAGGAGTT CAAATGAGCA CCAGTGAAAG ACGAATGTGT
  TTTGTAAATA CCGCTACAGG CGGAAGGTGG GGGAAACCAA GTGGTGAGGG TAAGTTATTT
  C
  TAACCACCAG CTTCCCAAAC TCCTCATGGG CACTGGAATC GCTGTTCTGG ATTCAGATTC
  TCTCATTGAT TTGCAAATCG CCTGGAAGAC CTCTAGGATC T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136128444	ENSMUSSNP5374679	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs51477608					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:156266052 () rs orientation: forward

Symbol	Name	Function Class
4930570G19Rik	RIKEN cDNA 4930570G19 gene	within coordinates
Cpgi13974	CpG island 13974	277 bp proximal
Negr1	neuronal growth regulator 1	1379 bp upstream
Rr587959	regulatory region 587959	within coordinates
Rr587960	regulatory region 587960	1228 bp proximal
Rr587961	regulatory region 587961	1565 bp proximal
Rr587962	regulatory region 587962	1690 bp proximal
Tssr32476	transcription start site region 32476	1377 bp upstream
Tssr32477	transcription start site region 32477	1535 bp upstream
Tssr32478	transcription start site region 32478	1680 bp upstream
Tssr32479	transcription start site region 32479	1726 bp upstream
Tssr36286	transcription start site region 36286	1332 bp downstream