rs51442502 SNP Detail

Summary

• ID
  rs51442502
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121078468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTGTGTCT GTATGCCCAT CCCAGCCCCC CTGACTGGTT
  AACAGGTAAG GCTCACCTCT CCTCCAAATG CCATCTTCTC CACTTAGGTT CTAAACTCAA
  R
  TCCGTTTCCT CTTCTGAAGC CTTTTTGTTC CTCTTTTCTC ACACTCCTGT GGCAAGATCC
  CTCTCCTGCA GCTCTCTAAT AGCGAGTATG TCAAATTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135717537	ENSMUSSNP195736	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51442502					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121078468 () rs orientation: forward

Symbol	Name	Function Class
Rr584034	regulatory region 584034	475 bp proximal
Rr584035	regulatory region 584035	1659 bp proximal
Tlcd4	TLC domain containing 4	1712 bp upstream
Tssr35409	transcription start site region 35409	1789 bp upstream
Tssr35410	transcription start site region 35410	1761 bp upstream
Tssr35411	transcription start site region 35411	1716 bp upstream