rs51438653 SNP Detail

Summary

• ID
  rs51438653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121084713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGACCTA TTCAATCTGT AACCCCATAA GGGTCTGAAG
  GAATGTTTGT TGTCAAGAGG TTTTATTTTG CTGTAATTTA GGCTAAGTTC ACAAACGCAC
  R
  CACAACTGGG ATTAGAGTGG GCAGTGGAAG TCTATCATTT CAGAGGACCG CGGGAGGAAT
  AAGCCAGAAA TGCTTTGTGA TAAACTTAAC TGCAGGGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135717657	ENSMUSSNP675472	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51438653					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121084713 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	709 bp upstream
Cpgi13756	CpG island 13756	418 bp proximal
Gm56787	predicted gene, 56787	within coordinates
Rr367543	regulatory region 367543	474 bp upstream
Rr375663	regulatory region 375663	787 bp downstream
Rr584038	regulatory region 584038	within coordinates
Rr584039	regulatory region 584039	559 bp proximal
Rr584040	regulatory region 584040	767 bp proximal
Tssr31434	transcription start site region 31434	661 bp upstream
Tssr31435	transcription start site region 31435	757 bp upstream
Tssr31436	transcription start site region 31436	787 bp upstream
Tssr35412	transcription start site region 35412	534 bp downstream