rs51410645 SNP Detail

Summary

• ID
  rs51410645
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142325034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGCTGC TATGACATGA
  TTTGCATATC TCTGAAGATA AATGCCTTTT ACAATGTGGC AGAAGCACTG TTTAAGTGAA
  AACTGTTAAT AAAAATGATT AAGCTTACCA TAATTGTTTC AAGTGCATGC TGTACATTGT
  TCATAATGTA AGAAACGCCG CTCCTAAATT TCTGTAAGAG GGGAGGTCAT TAGAAGACTC
  T
  TAGCTGTCAC ACAGGCACCC AATGATGAGG GGTTCAGCTC TGCAACTGAA CATTCAGAAT
  AACAGTAGTA CCACACAGAG GAAATGTCAC AGTCACGGGG CTTAGTACTC TTGTGGAATA
  CAGAAACACA AAGATACTTT CTGTATAATT ATTTTCTGGT AGTGGCATTA AACCCAGGGC
  TTTAAAAAAT ACTTCTAGTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136016086	ENSMUSSNP319224	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs51410645					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142325034 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1390 bp upstream
Gbp2b	guanylate binding protein 2b	94 bp downstream
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	609 bp upstream
Rr586457	regulatory region 586457	297 bp distal
Rr586458	regulatory region 586458	839 bp proximal
Rr586459	regulatory region 586459	1340 bp proximal
Tssr32216	transcription start site region 32216	1088 bp downstream
Tssr32217	transcription start site region 32217	1050 bp downstream
Tssr32218	transcription start site region 32218	996 bp downstream
Tssr32219	transcription start site region 32219	959 bp downstream
Tssr32220	transcription start site region 32220	945 bp downstream
Tssr32221	transcription start site region 32221	927 bp downstream
Tssr32222	transcription start site region 32222	871 bp downstream
Tssr32223	transcription start site region 32223	814 bp downstream
Tssr32224	transcription start site region 32224	760 bp downstream
Tssr32225	transcription start site region 32225	422 bp downstream
Tssr32226	transcription start site region 32226	382 bp downstream
Tssr32227	transcription start site region 32227	1323 bp upstream
Tssr32228	transcription start site region 32228	1374 bp upstream
Tssr32229	transcription start site region 32229	1413 bp upstream
Tssr32230	transcription start site region 32230	1449 bp upstream
Tssr32231	transcription start site region 32231	1466 bp upstream
Tssr32232	transcription start site region 32232	2000 bp upstream
Tssr35947	transcription start site region 35947	92 bp upstream