rs51355522 SNP Detail

Summary

• ID
  rs51355522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111273768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAA TCAAAGTGAC TTGTCCAAGA
  Y
  CCCTGGACAA GCTGTCAGTG TATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147203466	ENSMUSSNP5701149	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321261808	CHEV_4_111089176	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51355522					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111273768 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agbl4	ATP/GTP binding protein-like 4			Intron
Bend5	BEN domain containing 5			Intron
				Noncoding-Transcript-Variant
Cpgi14589	CpG island 14589			1048 bp distal
Gm68588	predicted gene, 68588			within coordinates
Rr597456	regulatory region 597456			1555 bp distal
Rr597457	regulatory region 597457			1513 bp distal
Tssr38381	transcription start site region 38381			1535 bp downstream
Tssr38382	transcription start site region 38382			1353 bp downstream
Tssr38383	transcription start site region 38383			1312 bp downstream