rs51329206 SNP Detail

Summary

• ID
  rs51329206
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95856789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAAATTA CTATTTAGGT
  TTAGATATTG TATTTAAGAT TGTTAGGAAA GAAGGCAGTA TTACTTTAAT GATCCCATTT
  GTTTAAAAAC AAATGTCTAA TCATAGGGTG TATTCAGGTC TGCAATTTTG TGCTCTGATC
  ATCTGACTGA GATGGTAAAC TGGGTTCTTT ATGATGTCAC TGACTTCCCT ATGAGGTCAC
  A
  TGGAGTTCAA GAGTTTCTTA AACTATACTG CAATATTTCC AAGTGCTATG ACCATATCCT
  TTCTTAAAGC AGTATTTTGA CTTCCTACTT TGTGCTGGCC TCACAGGAAT TAGTTTAACT
  AGCAGAGTTG TGTATCATTA CAATGAAAGG CAAAGTTCCC CAAGATCTAG AGAGAGAGAG
  AGAAAGAGAG AGAGAGAAAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147069061	ENSMUSSNP1961777	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs51329206					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95856789 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530080O11Rik	RIKEN cDNA 9530080O11 gene			897 bp upstream
Cpgi14458	CpG island 14458			621 bp distal
Hook1	hook microtubule tethering protein 1			Intron
				Noncoding-Transcript-Variant
Rr398349	regulatory region 398349			1289 bp downstream
Rr595499	regulatory region 595499			1594 bp distal
Rr595500	regulatory region 595500			1173 bp distal
Rr595501	regulatory region 595501			407 bp distal
Tssr37834	transcription start site region 37834			1407 bp downstream
Tssr37835	transcription start site region 37835			1232 bp downstream
Tssr37836	transcription start site region 37836			1171 bp downstream
Tssr37837	transcription start site region 37837			1149 bp downstream
Tssr37838	transcription start site region 37838			1126 bp downstream
Tssr37839	transcription start site region 37839			1367 bp upstream
Tssr37840	transcription start site region 37840			1398 bp upstream
Tssr42465	transcription start site region 42465			1535 bp upstream