rs51290362 SNP Detail

Summary

• ID
  rs51290362
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:47055659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATTAATT CCTCTTGTGC
  AGTTTATTCT CATATTTTAA TTTCATTTGT TCCAGCTCAT TATTGTCAAA AGATTTTTTT
  ATTCCCCCAA ACAGTAAACT GTTTTTAACC TACCACTGAT GTATGTCAAT ATATTCAATA
  TTAATTTTAA AGATCCAACT ATAACTATAT AAACAATTCT AACATTGTTG TATCACTGAT
  R
  TCTACATTTT TAAAAACACA CCCTTGTACA GTAGCATATA CCTGCAATCC CAGAATGTGG
  CTCTCAGGAA CTGCAGGTCA CCCTCAGCTA ACCGGCAAGC TGAAAGCCAG CTTAGCCTTC
  ATCATACCCT GTTTTTAAAA AATATAAAAA AATAGCCGGG TGAAGGTGGT GCACCACTTT
  GATGCCAGCA TTCAGAAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148981253	ENSMUSSNP840384	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51290362					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47055659 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22960	predicted gene, 22960			408 bp upstream
Kif13a	kinesin family member 13A			Intron
				Noncoding-Transcript-Variant
Rr478995	regulatory region 478995			1006 bp distal
Rr478996	regulatory region 478996			580 bp proximal
Rr478997	regulatory region 478997			686 bp proximal