rs51288623 SNP Detail

Summary

• ID
  rs51288623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109264926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGGGTGC TGTCACTATC AACATGGCTG TCTTGGCCAG
  CCCCACCCCC ACCCCTCCAA AGTCACAGTC AGACCCCCTA GGTTGATCCC GGGCACTGCC
  R
  GTTGCTGTCT GGAGATAGTC AGCAGCTCTG CTGTGTTTGG GTTTCAGTGC TTAGGGGGCA
  GTTGCTGGGA TCCTAGGCTG CTGGGAGGTT GCTGGGCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147197583	ENSMUSSNP999527	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321254096	CHEV_4_109080334	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51288623					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109264926 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14573	CpG island 14573			within coordinates
Rr597311	regulatory region 597311			1507 bp distal
Rr597313	regulatory region 597313			609 bp distal
Rr597314	regulatory region 597314			within coordinates
Tssr38345	transcription start site region 38345			966 bp downstream
Tssr38346	transcription start site region 38346			610 bp downstream
Tssr38347	transcription start site region 38347			564 bp downstream
Tssr42761	transcription start site region 42761			1467 bp upstream
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				Noncoding-Transcript-Variant
Ttc39aos1	Ttc39a opposite strand RNA 1			1496 bp upstream