rs51280576 SNP Detail

Summary

• ID
  rs51280576
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116458009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTCATCATAC TTACTTTAAA AATAAAATTC TCATATAGAA
  ACTTCCTTGA AGTCCAACTT CAAGCTGTTG AGAGTGGGAG AAACTTCATA ACTAAATCCC
  R
  AGATCATATT TTGCATGGGT GTAGAGGATT AAGAAGGTTG TTCTAAGGTA GGCGTGGTGG
  TGCATATCTT CGGTCCTGGC ATTTGTGTTG TAGAGACAGT G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss135670770	ENSMUSSNP425627	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs51280576					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116458009 () rs orientation: forward

Symbol	Name	Function Class
4930512P04Rik	RIKEN cDNA 4930512P04 gene	205 bp downstream
Cpgi13738	CpG island 13738	1332 bp distal
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	1745 bp upstream
Rr375625	regulatory region 375625	within coordinates
Rr397966	regulatory region 397966	1559 bp downstream
Rr583758	regulatory region 583758	1694 bp distal
Rr583759	regulatory region 583759	1193 bp distal
Tssr35326	transcription start site region 35326	1812 bp upstream
Tssr35327	transcription start site region 35327	1790 bp upstream
Tssr35328	transcription start site region 35328	1776 bp upstream
Tssr35329	transcription start site region 35329	1719 bp upstream
Tssr35330	transcription start site region 35330	1706 bp upstream