rs51277981 SNP Detail

Summary

• ID
  rs51277981
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118287129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGAGCCTG GGAGGCAAAG GGGAAGCCCG GGGGCACTGG
  TGTTCACCAC AGAAGTGGAA CCCTAGGTTT GTTCAGGTAC TAGAAAGGAC AGAAGCAGGT
  A
  GGAGTCCCTG CAGGGGACAG AGGCGAGAGG AGAGTCTTGG AAAAGGGCCA GAGGGACTTT
  ACCTGGGAGA AGGGGGTATG AGAGGAGTGG CTGAAGGGG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147308097	ENSMUSSNP5204856	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51277981					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118287129 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14684	CpG island 14684			1884 bp distal
Elovl1	ELOVL fatty acid elongase 1			Intron
				Noncoding-Transcript-Variant
Rr598393	regulatory region 598393			1797 bp distal
Rr598394	regulatory region 598394			1663 bp distal
Rr598395	regulatory region 598395			221 bp distal
Rr598396	regulatory region 598396			within coordinates
Tssr38658	transcription start site region 38658			1738 bp downstream
Tssr38659	transcription start site region 38659			1116 bp downstream
Tssr38660	transcription start site region 38660			242 bp downstream
Tssr38661	transcription start site region 38661			207 bp downstream
Tssr38662	transcription start site region 38662			168 bp downstream
Tssr38663	transcription start site region 38663			1274 bp upstream