rs51261480 SNP Detail

Summary

• ID
  rs51261480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90519088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGGAGTA CTCTGTGTTC
  CTGACCACGC TGTGCATGGC CTACAATGAC TTCTTCCTAG AGGACAACAA ATGACCAGGA
  CACTGGCAGC TCCTGATCCT GACCTCTGCA GCCTCTTTAA CTGCCCCTCC TATGGCCCCT
  GCCCTTCTCT TTCTCCCAGA TGGATCCTTC CAGCAGAGAA ATAAAGCCTT ATCCATTACA
  Y
  GCACTGGTTT TAAGGTGGTT TGTGTCTTGG CTGAGGCAGG GGAGAACAGA CATTTTGGAC
  CACTAAGCCT TGGGCCACAC ACAGGTGGTC TGTGGATAGC AGGAGCTGGG CTCTCATCCC
  TCTTCACTGG CAGTCCTTCA TCATGGACAT TGTTGGAGGT GTCCTGACTT TGTTCTGCAC
  TCCTGTAAAA TAACAAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424284	NES15923533	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51261480					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424284	NES15923533	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90519088 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13468	CpG island 13468	1205 bp proximal
Gm57853	predicted gene, 57853	1403 bp upstream
Rr580416	regulatory region 580416	339 bp proximal
Rr580417	regulatory region 580417	896 bp proximal
Rr580418	regulatory region 580418	1007 bp proximal
S100a5	S100 calcium binding protein A5	mRNA-UTR
S100a6	S100 calcium binding protein A6 (calcyclin)	1101 bp upstream
Tssr30242	transcription start site region 30242	491 bp upstream
Tssr30243	transcription start site region 30243	1051 bp upstream
Tssr30244	transcription start site region 30244	1088 bp upstream
Tssr30245	transcription start site region 30245	1119 bp upstream
Tssr30246	transcription start site region 30246	1365 bp upstream
Tssr30247	transcription start site region 30247	1395 bp upstream
Tssr30248	transcription start site region 30248	1501 bp upstream
Tssr30249	transcription start site region 30249	1738 bp upstream
Tssr30250	transcription start site region 30250	1947 bp upstream
Tssr30251	transcription start site region 30251	1994 bp upstream