rs51229760 SNP Detail

Summary

• ID
  rs51229760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79049503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTTAAAG GAAGGGCAAA
  ACACAGCACA AATCAATATC TTCTATACAC TTTTTTAAAA AACGAAAACA AGTTATCAGT
  TTGATGGTAG CGATGGTTCA TTATGTTAAA GAGGCCAATC TGAAGGATTT ACAAAGTTTC
  AGAGTTGTCT CAAATTATAG AATTTTTTTA AGCTGATGTA TTGAATAAAG CAGACATTTT
  R
  TTCGGTTGGT TTTGAGACAG GGCTCACTAT ATAGTGCACT TGAACTTGCC AGCCTCCTGG
  CTCAGCCTTC CAACTCTAGC CCACCCAAAC ACTTTCCCAA TTTCCAGAAG CTGTGAAAGT
  TTCCCCAAAC AACACAGTGT TGCAATTTTT ACAACTAGTA TCCACCATGG TTGGTTGGTT
  GATTGGTTGG TTTTGGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60421109	NES15922990	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51229760					SNP	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60421109	NES15922990	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79049503 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr578466	regulatory region 578466			1943 bp proximal
Tssr33629	transcription start site region 33629			1365 bp upstream
Tssr33630	transcription start site region 33630			768 bp downstream