rs51223373 SNP Detail

Summary

• ID
  rs51223373
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTATATTT GATACTGCAA
  ACATGGACTC TGTAGACATA CTAAATTGTA TTGTTGGGAT TTGTTTTTAC AACACAGTGA
  TAGGGCAGCT GTCTTTGGGT AGACATTTTG TATCACATAC ATCCCCTACT GGATATTCTT
  AGTTGTGTGC TCATAAGTAA TTCAAAGATG TAGCTTGCTC TAAGCTGGGA TTGGCATGTT
  R
  TAAACATGAT AAAAATCTGA ACATATCCAT GGAACACAGC TCCTAGGGCC TCATGCTATC
  TGCAGACATT GGTTCCCAGG GTAGACAATG GGCAGTGCCC AATGTGGGAA GGCTCTGTGG
  TTGCTGGATG AGCAGAGTAT TTCATTGGAG AGGAGAAGAA AATTCCCCTC CAGGCAGAAT
  GCATAGGCGA GTGGGCGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136016035	ENSMUSSNP4177778	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51223373					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324411 () rs orientation: forward

Symbol	Name	Function Class
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	1232 bp upstream
Rr586457	regulatory region 586457	85 bp proximal
Rr586458	regulatory region 586458	1462 bp proximal
Rr586459	regulatory region 586459	1963 bp proximal
Tssr32216	transcription start site region 32216	465 bp downstream
Tssr32217	transcription start site region 32217	427 bp downstream
Tssr32218	transcription start site region 32218	373 bp downstream
Tssr32219	transcription start site region 32219	336 bp downstream
Tssr32220	transcription start site region 32220	322 bp downstream
Tssr32221	transcription start site region 32221	304 bp downstream
Tssr32222	transcription start site region 32222	248 bp downstream
Tssr32223	transcription start site region 32223	191 bp downstream
Tssr32224	transcription start site region 32224	137 bp downstream
Tssr32225	transcription start site region 32225	184 bp upstream
Tssr32226	transcription start site region 32226	232 bp upstream
Tssr32227	transcription start site region 32227	1946 bp upstream
Tssr32228	transcription start site region 32228	1997 bp upstream
Tssr35947	transcription start site region 35947	525 bp downstream