rs51223044 SNP Detail

Summary

• ID
  rs51223044
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129086965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATGACATC TGAGACTTCC ACTTGGCTGC TCTGCAGGGT
  TCGTCCCTGC TCTGGGGCTC GGCTCAGCAT TTCTCCAGTT CTTCTCCTGG CTTCCTGCCT
  A
  ATCCCCCAGA GCTTCCTCTG TGGGCTTCTG CTTTGACTCC ACGCCTCCCC GTTAATCCCA
  GGCTTCTCCA TCCTCAGCTC TCGGACCTCC TCTCTTCAT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147584301	ENSMUSSNP4876408	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs51223044					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129086965 () rs orientation: forward

Symbol	Name	Function Class
Gm14024	predicted gene 14024	1331 bp upstream
Rr373844	regulatory region 373844	1992 bp downstream
Rr373845	regulatory region 373845	897 bp upstream
Rr564889	regulatory region 564889	1449 bp distal
Rr564890	regulatory region 564890	829 bp distal
Rr564891	regulatory region 564891	386 bp distal
Rr564892	regulatory region 564892	within coordinates
Rr564893	regulatory region 564893	464 bp proximal
Tssr20109	transcription start site region 20109	1312 bp upstream