rs51213710 SNP Detail

Summary

• ID
  rs51213710
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121084599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGG CCAATTTGTA GCACCTTTCT
  B
  GACCTGTCTG CATGCCTGAC CTATT                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ
ss60440894	NES15940981	PERLEGEN	MM_PANEL2	f	SNP			G	C	G
ss135717651	ENSMUSSNP2994059	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ
rs51213710					SNP	C	T	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60440894	NES15940981	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121084599 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	823 bp upstream
Cpgi13756	CpG island 13756	532 bp proximal
Gm56787	predicted gene, 56787	within coordinates
Rr367543	regulatory region 367543	588 bp upstream
Rr375663	regulatory region 375663	673 bp downstream
Rr584038	regulatory region 584038	within coordinates
Rr584039	regulatory region 584039	673 bp proximal
Rr584040	regulatory region 584040	881 bp proximal
Tssr31434	transcription start site region 31434	775 bp upstream
Tssr31435	transcription start site region 31435	871 bp upstream
Tssr31436	transcription start site region 31436	901 bp upstream
Tssr35412	transcription start site region 35412	648 bp downstream