rs51187460 SNP Detail

Summary

• ID
  rs51187460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95855885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCGCGT CCGTCGCTGT
  GAGCGCGGCG TCGAGGTTCT CGGACCATGG AGGACCCGCA GCCGCTGCCA CAGTCCGAGC
  TGCCGCTGTG TGACAGCCTC ATCATCTGGG TGAGTGTAGT TCCACGCTTG CCAGCGAGGC
  CACCTGCGGG GCGAGCGGAG CACGGAGCCT CCGGCTGCCA CGTACACCTC CTCCGCAACC
  Y
  TTCCGTCCCA GCCTCTGAGA GCTCCGCCTC GCACAGGTGA CCAGGAGGCG CTGGCAGCCT
  CGGTTCCCAG ATTGCTGTCC TTTTGGGCCC ACACAGCACC CATGGCGGTG TAGACACAGC
  TGAGAGAGAT GGCCAAATTA CCTTTGATGT GGGAGCTCTT TTTCATTTTT TCCCCCTCTT
  CCTCCCCTTC CCATCTTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147069046	ENSMUSSNP5449313	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51187460					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95855885 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530080O11Rik	RIKEN cDNA 9530080O11 gene			within coordinates
Cpgi14458	CpG island 14458			within coordinates
Hook1	hook microtubule tethering protein 1			Intron
				Noncoding-Transcript-Variant
Rr398349	regulatory region 398349			385 bp downstream
Rr595498	regulatory region 595498			1840 bp distal
Rr595499	regulatory region 595499			690 bp distal
Rr595500	regulatory region 595500			269 bp distal
Rr595501	regulatory region 595501			within coordinates
Tssr37834	transcription start site region 37834			503 bp downstream
Tssr37835	transcription start site region 37835			328 bp downstream
Tssr37836	transcription start site region 37836			267 bp downstream
Tssr37837	transcription start site region 37837			245 bp downstream
Tssr37838	transcription start site region 37838			222 bp downstream
Tssr42465	transcription start site region 42465			631 bp upstream