rs51164311 SNP Detail

Summary

• ID
  rs51164311
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64658381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTGTTACC ATCTCCACCA AGACATCACT TTGTATCAAG
  TGCTGGGAGA GTTAGCTTGC AACCTCACTT CAGCCCTCCT TTCGGGCCTG TGTTGTTTCC
  M
  TGTGAGCTCT GGCATCCCTC CATCAGGAAT GGGAACAGCC AGGGAGTCCA GCAAGTGAGT
  CACAGACCAG GGTCGCACAA GGTCAAAGGC TGCTACACCT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61173086	NES16687271	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs51164311					SNP	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61173086	NES16687271	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64658381 () rs orientation: forward

Symbol	Name	Function Class
Gm43838	predicted gene 43838	within coordinates
Gm52815	predicted gene, 52815	within coordinates
Rr378042	regulatory region 378042	within coordinates
Rr612037	regulatory region 612037	1580 bp distal
Rr612038	regulatory region 612038	within coordinates