rs51150540 SNP Detail

Summary

• ID
  rs51150540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79054262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGTGGC CTTTGGCACT
  GTCAGGGATT CCTACTGGGT CTCTTGTCTA TCTGAAGACC GTATCCATCC TCTTCTCTCT
  TCCCCTCCGT AACAAAAGGC AATTATTCTT TCCAATCATG ATGGGAGATT CTTCTCCCTG
  CCTCCCACCC ACTTCTTACA CTTCTTACAT TACTCATTAC CTAATCGCCA CAGATTTGAA
  Y
  ATACTGCTCC CAACCAAAGA TCTGCCCTGT CAACTTTTAA ACGTCCGTGC CTCTCCTACC
  TCAAAGGCAA AATTAAACTA GATTCCTCCT TAGACACAAT TTCCTATGTC TACAGACATT
  CTCTTCCCAC ACTTCACAAC CAAATCTTGC AAGAATTCCT CATTTTCGAC TTTCCCTGTT
  TTTCCATCCT GTATGTTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60421100	NES15922931	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51150540					SNP	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60421100	NES15922931	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79054262 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2			Intron
				Noncoding-Transcript-Variant
Rr578467	regulatory region 578467			1488 bp distal
Rr578468	regulatory region 578468			590 bp distal
Tssr33632	transcription start site region 33632			1025 bp upstream
Tssr33633	transcription start site region 33633			546 bp downstream