rs51119622 SNP Detail

Summary

• ID
  rs51119622
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138124092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTA CCCGCATCTC TCCTCTCTGA
  G
  AGCAGAGATT TGGGGTGGGT TCCTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147644482	ENSMUSSNP673687	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321373125	CHEV_4_137952696	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51119622					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138124092 () rs orientation: forward

Symbol	Name	Function Class
AB041806	hypothetical protein, MNCb-2457	within coordinates
Cpgi15151	CpG island 15151	148 bp distal
Fam43b	family with sequence similarity 43, member B	323 bp upstream
Rr602906	regulatory region 602906	1573 bp distal
Rr602907	regulatory region 602907	1374 bp distal
Rr602908	regulatory region 602908	1347 bp distal
Rr602909	regulatory region 602909	within coordinates
Tssr44164	transcription start site region 44164	344 bp upstream
Tssr44165	transcription start site region 44165	317 bp upstream