rs51118145 SNP Detail

Summary

• ID
  rs51118145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAATGGGC AGTGCCCAAT
  GTGGGAAGGC TCTGTGGTTG CTGGATGAGC AGAGTATTTC ATTGGAGAGG AGAAGAAAAT
  TCCCCTCCAG GCAGAATGCA TAGGCGAGTG GGCGTTGCAC CTCCCCCATT GAGAGAACTT
  CTTGTTTTCT TTCATGCTCC AGCCTACTGT GTTTCCTTTC TAATCTCTCT TTTTATTTTT
  Y
  AAAAACACTT TCTCCTTCTA AGAGTTTTAG AATGACTTCT ACACAGAATG GAGAACTCAA
  AATAAATTTC GTTCTATTCC TCTGAGGCTC ATAATCACAG TGCCAACTCT TGTGAAACCA
  ACCTTCATTT TTATCTTTCT TTTGCTGCTA TGACATGATT TGCATATCTC TGAAGATAAA
  TGCCTTTTAC AATGTGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	LG/J	MOLF/EiJ	NZW/LacJ	PWK/PhJ
ss360024889	MGP_WTSI_3_142281898	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	LG/J	MOLF/EiJ	NZW/LacJ	PWK/PhJ
rs51118145					SNP	C	C	C	C	C	C	C	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360024889	MGP_WTSI_3_142281898	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324695 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1729 bp upstream
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	948 bp upstream
Rr586457	regulatory region 586457	within coordinates
Rr586458	regulatory region 586458	1178 bp proximal
Rr586459	regulatory region 586459	1679 bp proximal
Tssr32216	transcription start site region 32216	749 bp downstream
Tssr32217	transcription start site region 32217	711 bp downstream
Tssr32218	transcription start site region 32218	657 bp downstream
Tssr32219	transcription start site region 32219	620 bp downstream
Tssr32220	transcription start site region 32220	606 bp downstream
Tssr32221	transcription start site region 32221	588 bp downstream
Tssr32222	transcription start site region 32222	532 bp downstream
Tssr32223	transcription start site region 32223	475 bp downstream
Tssr32224	transcription start site region 32224	421 bp downstream
Tssr32225	transcription start site region 32225	83 bp downstream
Tssr32226	transcription start site region 32226	43 bp downstream
Tssr32227	transcription start site region 32227	1662 bp upstream
Tssr32228	transcription start site region 32228	1713 bp upstream
Tssr32229	transcription start site region 32229	1752 bp upstream
Tssr32230	transcription start site region 32230	1788 bp upstream
Tssr32231	transcription start site region 32231	1805 bp upstream
Tssr35947	transcription start site region 35947	241 bp downstream