rs51112229 SNP Detail

Summary

• ID
  rs51112229
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109264968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCA GCAGCTCTGC TGTGTTTGGG
  W
  TTCAGTGCTT AGGGGGCAGT TGCTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147197589	ENSMUSSNP2533383	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321254098	CHEV_4_109080376	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51112229					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109264968 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597311	regulatory region 597311			1549 bp distal
Rr597313	regulatory region 597313			651 bp distal
Rr597314	regulatory region 597314			within coordinates
Tssr38345	transcription start site region 38345			1008 bp downstream
Tssr38346	transcription start site region 38346			652 bp downstream
Tssr38347	transcription start site region 38347			606 bp downstream
Tssr42761	transcription start site region 42761			1509 bp upstream
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				Noncoding-Transcript-Variant
Ttc39aos1	Ttc39a opposite strand RNA 1			1538 bp upstream