rs51100353 SNP Detail

Summary

• ID
  rs51100353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:23117332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT GACCAAGTAA AGCCACAAGA
  Y
  TCAGTTGTTA AGGCTCTCTG GATGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146216144	ENSMUSSNP3099943	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss325768027	CHEV_19_23214458	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51100353					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23117332 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	686 bp proximal
Gm56648	predicted gene, 56648	within coordinates
Gm59174	predicted gene, 59174	175 bp upstream
Klf9	Kruppel-like transcription factor 9	1258 bp upstream
Rr405898	regulatory region 405898	632 bp upstream
Rr545290	regulatory region 545290	within coordinates
Rr545291	regulatory region 545291	186 bp proximal
Rr545292	regulatory region 545292	1136 bp proximal
Tssr155578	transcription start site region 155578	139 bp upstream
Tssr155579	transcription start site region 155579	854 bp upstream
Tssr155580	transcription start site region 155580	972 bp upstream
Tssr155581	transcription start site region 155581	988 bp upstream
Tssr155582	transcription start site region 155582	1011 bp upstream
Tssr155583	transcription start site region 155583	1051 bp upstream
Tssr155584	transcription start site region 155584	1096 bp upstream
Tssr155585	transcription start site region 155585	1158 bp upstream
Tssr155586	transcription start site region 155586	1215 bp upstream
Tssr155587	transcription start site region 155587	1674 bp upstream
Tssr155588	transcription start site region 155588	1708 bp upstream
Tssr158621	transcription start site region 158621	669 bp downstream
Tssr158622	transcription start site region 158622	999 bp downstream