rs51034837 SNP Detail

Summary

• ID
  rs51034837
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161616965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCCATATA AACCATATAA ATCCCAATAA GTTCCTATAT
  TCCACCTTTT TGGCAGACTC TACATTTTAA GTGGTTTTAT TTTTTTTATC TCATGCTTTG
  R
  GATTTCTGGG ATGAGCACCC TACCCCTCTC ACCTATGCCA AAACAACTCC CAAAGTGTTA
  TTTTTCTGCT GCCTTCATCC TGCCCCACCC CAGCTGCTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ
ss60335628	NES15842699	PERLEGEN	MM_PANEL2	f	SNP	G			G	A		G	G
ss145922229	ENSMUSSNP605045	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ
rs51034837					SNP	G	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60335628	NES15842699	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161616965 () rs orientation: forward

Symbol	Name	Function Class
Fasl	Fas ligand	901 bp upstream
Rr421846	regulatory region 421846	725 bp distal
Tssr14586	transcription start site region 14586	1021 bp upstream
Tssr14587	transcription start site region 14587	940 bp upstream
Tssr14588	transcription start site region 14588	925 bp upstream
Tssr14589	transcription start site region 14589	913 bp upstream
Tssr14590	transcription start site region 14590	900 bp upstream
Tssr14591	transcription start site region 14591	890 bp upstream