rs51011713 SNP Detail

Summary

• ID
  rs51011713
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34708455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATGTATAT GTTTGAAAAT TAATATATCT TAGGGGTATA
  TATAAAATTT ACAATAATTG ACCCGACTCA GCCTCTCAAC TTAAAGGAAC AAGGAAGGGG
  M
  TTGGCATATC TGACCCAAAT CAAACACTTT GGGGAGACGC TCAGGTTCAA ATATTTTGCA
  ATACAGAAGA GAACTTTTGA TAGTTGAACT CATTTTAAGT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60385758	NES15886429	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51011713					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60385758	NES15886429	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34708455 () rs orientation: forward

Symbol	Name	Function Class
Gm54566	predicted gene, 54566	1021 bp downstream
Gm64654	predicted gene, 64654	1845 bp upstream
Rr439	regulatory region 439	222 bp distal
Rr366704	regulatory region 366704	within coordinates
Rr575169	regulatory region 575169	1388 bp distal
Rr575170	regulatory region 575170	within coordinates
Rr575171	regulatory region 575171	1240 bp proximal
Sox2	SRY (sex determining region Y)-box 2	1845 bp downstream
Sox2ot	SOX2 overlapping transcript (non-protein coding)	within coordinates
Tssr28828	transcription start site region 28828	713 bp downstream
Tssr32982	transcription start site region 32982	298 bp upstream