rs50990143 SNP Detail

Summary

• ID
  rs50990143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106552670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGAGGAGT GGTAGCCCGG ATCCAAGTAG GTCAGCAGGC
  TAATATCAGT CCCTGATACT AGTTCAGGAG CTTCAAACAC TGACAACGGG GAACATCAGT
  Y
  CTATGTTGAG GAGGGAAAGG GATAGTTAAG TAGGCTTACC CATCTCTTCC TTTGCTGACA
  ATCTTTACTT CAAAATAGTA AATACCACAG GCTGCTGGGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60658920	NES16259104	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50990143					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60658920	NES16259104	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106552670 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20953	CpG island 20953	853 bp proximal
Ranbp10	RAN binding protein 10	Intron
Rr401097	regulatory region 401097	1041 bp upstream
Rr669014	regulatory region 669014	1831 bp distal
Rr669015	regulatory region 669015	894 bp distal
Rr669016	regulatory region 669016	1302 bp proximal
Rr669017	regulatory region 669017	1717 bp proximal
Tsnaxip1	translin-associated factor X (Tsnax) interacting protein 1	1693 bp upstream
Tssr79188	transcription start site region 79188	1683 bp upstream
Tssr79189	transcription start site region 79189	1715 bp upstream
Tssr79190	transcription start site region 79190	1732 bp upstream
Tssr82694	transcription start site region 82694	267 bp downstream
Tssr82695	transcription start site region 82695	1152 bp downstream
Tssr82696	transcription start site region 82696	1555 bp downstream
Tssr82697	transcription start site region 82697	1579 bp downstream
Tssr82698	transcription start site region 82698	1604 bp downstream
Tssr82699	transcription start site region 82699	1642 bp downstream