rs50973035 SNP Detail

Summary

• ID
  rs50973035
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153619762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGC TTGCACATGA ATGACCCTGA
  Y
  AAGGGTCAGT CATCGATGGG GAAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136115004	ENSMUSSNP3331728	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321031771	CHEV_3_153577089	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50973035					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153619762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13963	CpG island 13963	815 bp distal
Gm43400	predicted gene 43400	within coordinates
Rabggtb	Rab geranylgeranyl transferase, b subunit	1159 bp upstream
Rr587794	regulatory region 587794	1490 bp distal
Rr587795	regulatory region 587795	1020 bp distal
Rr587796	regulatory region 587796	within coordinates
Snord45c	small nucleolar RNA, C/D box 45C	1936 bp upstream
Tssr36248	transcription start site region 36248	1917 bp upstream
Tssr36249	transcription start site region 36249	1165 bp upstream
Tssr36250	transcription start site region 36250	1135 bp upstream