rs50961839 SNP Detail

Summary

• ID
  rs50961839
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118604814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAT AATGAGCAGT GAGGGCCCAA
  K
  AAGGCCATCC ATTCATTTGT CCTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147312466	ENSMUSSNP2621221	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320471730	CHEV_2_118600069	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50961839					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118604814 () rs orientation: forward

Symbol	Name	Function Class
D2Mit444	DNA Segment, Chr 2, Massachusetts Institute of Technology 444	359 bp proximal
Gm54146	predicted gene, 54146	within coordinates
Phgr1	proline/histidine/glycine-rich 1	Intron
Rr563334	regulatory region 563334	1554 bp distal
Rr563335	regulatory region 563335	1104 bp distal
Rr563336	regulatory region 563336	within coordinates
Rr563337	regulatory region 563337	1132 bp proximal
Rr563338	regulatory region 563338	1571 bp proximal
Tssr19573	transcription start site region 19573	1553 bp downstream