rs50951839 SNP Detail

Summary

• ID
  rs50951839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121083646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGAAAGAA AGTCTCCCAT AGGGGATTCT GAAAAGATGT
  GTTTTCCTTA ATACAGACCC AATGACCAAC ACAACAACTT CTAAGGTAGA CATCACCATG
  Y
  CTGCCCACTA ATAACTTCTT TTAAATATGA AGCGACTCGT AGGTTGAAGC CACTTTGGAG
  AACAGCAGAG AAGGTTCTGA AAGAAAACGG CATGACACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135717624	ENSMUSSNP6487013	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50951839					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121083646 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	1776 bp upstream
Cpgi13756	CpG island 13756	1485 bp proximal
Gm56787	predicted gene, 56787	856 bp downstream
Rr367543	regulatory region 367543	1541 bp upstream
Rr375663	regulatory region 375663	within coordinates
Rr584038	regulatory region 584038	604 bp proximal
Rr584039	regulatory region 584039	1626 bp proximal
Rr584040	regulatory region 584040	1834 bp proximal
Tssr31434	transcription start site region 31434	1728 bp upstream
Tssr31435	transcription start site region 31435	1824 bp upstream
Tssr31436	transcription start site region 31436	1854 bp upstream
Tssr35412	transcription start site region 35412	1601 bp downstream