rs50917468 SNP Detail

Summary

• ID
  rs50917468
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87414312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTTCAAA CCCCATGATA CCCACAGAGA GAGTGGAGGA
  AGAAAAGAGG GAGAGAAGAG AAGGTGCTAA TACCTTGTGA TAGGACCTCA GTGAGAAATG
  A
  GGGGTGACGG GGGGGGGGGT GTTTTGTTCT TGTTAAGGAA GGAAGTCTTA AGTAGACCTC
  ACCGGCTGTG GACAGGAGAG AGAACGAAAC AGTAAGACT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135463089	ENSMUSSNP1045475	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50917468					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87414312 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	1179 bp upstream
Rr397759	regulatory region 397759	229 bp downstream
Rr397760	regulatory region 397760	1231 bp upstream
Rr579498	regulatory region 579498	1930 bp distal
Rr579500	regulatory region 579500	within coordinates
Rr579501	regulatory region 579501	990 bp proximal
Rr579502	regulatory region 579502	1332 bp proximal
Rr579503	regulatory region 579503	1398 bp proximal
Rr579504	regulatory region 579504	1933 bp proximal