rs50914141 SNP Detail

Summary

• ID
  rs50914141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31053692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTCAAA CTGGGGCTGG
  CCCTCTGTAG ATTGTTGGCA GAGCGCCTGT GAGGAGAGCC AGGCGAGAGC GGCACACTCT
  TAATATTGAC CTTGTTTGGG TATCTAGGTG TGGTGATGTA TTCCAATCTA GCGGCTCATT
  TACACATTCC AGGCACCATT CTCCCTCTGA GCTGCATCCT CGCTCCAGTA CAGTGTTTCA
  Y
  GTCCCCGCGA CCTTGACTTT CCATAGCTGA ATGATCTTGT TGAATTCACC TGATGTGCAG
  CTTACTGTGA TCAAGCTTAC AGCACACTGT TGCTGTTTTT CTTTTGGCCC ACAATGGAGA
  TACATACCAA GATAATTGTA GATGAGGTGG TGGGTCGTCT GGGATTTGTT CCCCTAATTG
  GCAGAGGTGT GTGTGTAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146399977	ENSMUSSNP4557427	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50914141					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31053692 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpr107	G protein-coupled receptor 107			Intron
				Noncoding-Transcript-Variant
Rr372995	regulatory region 372995			within coordinates
Rr396880	regulatory region 396880			1143 bp upstream
Rr554555	regulatory region 554555			within coordinates
Rr554556	regulatory region 554556			1156 bp proximal
Tssr23435	transcription start site region 23435			138 bp upstream
Tssr23436	transcription start site region 23436			109 bp upstream