rs50908579 SNP Detail

Summary

• ID
  rs50908579
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31053127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATCCTTT TGCCTCAGCC
  TTCCTAGTGT TGGGTTTGCA GGTGTGTACT GCCACACGTG GCTTTAACTA TTTTATCATT
  TAAGAATTTT TATTTCTCTA ATGTGGGGTG GGGCACATAG GCACTGAGAA CATGCGTGTT
  GACTTGTGGG AGCAGGTTCT CTCCTTTCAC TGTGTGGCTC CTGGAAGGTG ATCTCAGGCT
  M
  TCGGCCTTAG AGGCAACAAG TCCCTTACTC ACTGAGCCAT CTTGTAGGCC CTTATTTATT
  TGCCTCTGCC TCTGCCTTTC CAGTACTGGG ATTAAAGGCT GCTTCCACTA CACCTGGGTT
  TTAAAATACA GTTTCAGTTT AACAAAATAG ATCATTGAAA CTAAGAGTAA GCCTTTCCGA
  ATAACTTCCC ATATTCTGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146399961	ENSMUSSNP6725278	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50908579					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31053127 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpr107	G protein-coupled receptor 107			Intron
				Noncoding-Transcript-Variant
Rr372995	regulatory region 372995			within coordinates
Rr396880	regulatory region 396880			1708 bp upstream
Rr554555	regulatory region 554555			228 bp proximal
Rr554556	regulatory region 554556			1721 bp proximal
Tssr23435	transcription start site region 23435			411 bp downstream
Tssr23436	transcription start site region 23436			448 bp downstream