rs50901921 SNP Detail

Summary

• ID
  rs50901921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138185586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG GATGGGTCAG GCTATCCCCT
  R
  AGAATGGCAG AGTCAGTGGA CTTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147647501	ENSMUSSNP1553390	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321373800	CHEV_4_138014190	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50901921					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138185586 () rs orientation: forward

Symbol	Name	Function Class
Camk2n1	calcium/calmodulin-dependent protein kinase II inhibitor 1	mRNA-UTR
Cpgi15153	CpG island 15153	1868 bp distal
Rr377275	regulatory region 377275	within coordinates
Rr602932	regulatory region 602932	1486 bp distal
Rr602933	regulatory region 602933	1331 bp distal
Rr602934	regulatory region 602934	1554 bp proximal
Rr602935	regulatory region 602935	1630 bp proximal
Tssr39862	transcription start site region 39862	1554 bp downstream
Tssr39863	transcription start site region 39863	1456 bp downstream
Tssr39864	transcription start site region 39864	1390 bp downstream
Tssr39865	transcription start site region 39865	1215 bp downstream
Tssr39866	transcription start site region 39866	895 bp downstream
Tssr39867	transcription start site region 39867	656 bp downstream
Tssr39868	transcription start site region 39868	586 bp downstream
Tssr39869	transcription start site region 39869	358 bp downstream
Tssr39870	transcription start site region 39870	329 bp downstream
Tssr39871	transcription start site region 39871	273 bp downstream
Tssr44166	transcription start site region 44166	1392 bp upstream
Tssr44167	transcription start site region 44167	1208 bp upstream
Tssr44168	transcription start site region 44168	1126 bp upstream
Tssr44169	transcription start site region 44169	1032 bp upstream
Tssr44170	transcription start site region 44170	1644 bp downstream