rs50885458 SNP Detail

Summary

• ID
  rs50885458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108803869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACCTAAAAC GGAAGTGACT TTTTCATGCT AGTCCTGAGG
  TACTCTTGTG AGAATGTATA TGTATTTGGA AAAACCTATC ACAAACCTTC CCATAATATC
  Y
  CATTTGGAGC GGAGGCAGGA GGATTACAGG TTGGAGACAA ACTGGGGCTA CATAGTGAGA
  TCCTGTCTTA GAATTTGTTT TTATATTTAA GGCTGAATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133510064	ENSMUSSNP6666841	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50885458					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108803869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17816	CpG island 17816	1324 bp proximal
Edem1	ER degradation enhancer, mannosidase alpha-like 1	Noncoding-Transcript-Variant
Gm35417	predicted gene, 35417	within coordinates
Rr399821	regulatory region 399821	1525 bp downstream
Rr399822	regulatory region 399822	575 bp upstream
Rr399823	regulatory region 399823	1428 bp upstream
Rr636211	regulatory region 636211	1341 bp distal
Rr636212	regulatory region 636212	within coordinates
Rr636213	regulatory region 636213	399 bp proximal
Rr636214	regulatory region 636214	1436 bp proximal
Tssr58099	transcription start site region 58099	1600 bp upstream
Tssr58100	transcription start site region 58100	1618 bp upstream
Tssr58101	transcription start site region 58101	1641 bp upstream
Tssr58102	transcription start site region 58102	1654 bp upstream
Tssr58103	transcription start site region 58103	1687 bp upstream
Tssr58104	transcription start site region 58104	1697 bp upstream
Tssr58105	transcription start site region 58105	1725 bp upstream
Tssr58106	transcription start site region 58106	1826 bp upstream
Tssr62395	transcription start site region 62395	1473 bp downstream