rs50802380 SNP Detail

Summary

• ID
  rs50802380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:21494673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTTACCT AGGTTAATAG
  GAAATTAACA ATAGTGACCT GTCATAACAT ACTTATTAGT TAATATATAG TGATGAGAGA
  AGAAATATAA TGATGTTAAT TTCTTGTAAA CATTTCATAA TTTTATTTTA CCACCACCAA
  GAGAACATAC ACTTTATTAT ATCTTTCAAG TAATGTTGAA CATTCACACT TAGGTAGTAT
  Y
  CTGCCTAGTT TGTAGCCTTT AGTAGTCCAG AGGATGCTCA GAGATTCAAA GTATACTCTA
  AATTTAGTCC AAGTTTTAAA ACTGAAAATG AAAGTGCAGT CCTCGGCCAA CTATTGATCT
  CCCACTTAGA GAATGAAAAC AAAGGCAGGC ATCTCCAGCT GCTTCTCCTA GCACTGGAAT
  TCATGCCCAG GATGACACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61258606	NES16881776	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50802380					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61258606	NES16881776	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:21494673 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700020N01Rik	RIKEN cDNA 1700020N01 gene			Intron
				Noncoding-Transcript-Variant
Rr1737	regulatory region 1737			1927 bp upstream
Rr428751	regulatory region 428751			31 bp proximal
Rr428752	regulatory region 428752			991 bp proximal